Let's say your document has a bunch of Headings, and the indentation is looking perfect, things are nesting nicely, but then you are wrapping up the conclusion and you make a Paragraph and it is indented at the same level as the last Heading, but you wanted it to be all the way to the left.
This is happening because Automio doesn't know that this Paragraph isn't supposed to be part of the most recent Heading's section. So there is an easy way to tell it what you want: a new Empty Heading. Just add a Heading to the left of your Paragraph, set it's Parent Section to "No Parent Section" and leave its Section Body empty. Hit Complete and take another look at your Output :)